IL_8C97_020

3D structure

PDB id

8C97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.07 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C97_020 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.4157

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8C97|1|A|C|1357
8C97|1|A|G|1358
8C97|1|A|A|1359
8C97|1|A|G|1360
8C97|1|A|G|1361
*
8C97|1|A|C|1370
8C97|1|A|G|1371
8C97|1|A|U|1372
8C97|1|A|A|1373
8C97|1|A|G|1374

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34