IL_8C98_013

3D structure

PDB id

8C98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.66 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8C98|1|A|G|801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C98_013 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.4929

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8C98|1|A|G|674
8C98|1|A|A|675
8C98|1|A|A|676
8C98|1|A|A|677
8C98|1|A|C|678
*
8C98|1|A|G|799
8C98|1|A|A|800
8C98|1|A|G|801
8C98|1|A|A|802
8C98|1|A|U|803
8C98|1|A|A|804
8C98|1|A|G|805
8C98|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4