IL_8C99_006

3D structure

PDB id

8C99 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C99_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.1993

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

8C99|1|A|G|188
8C99|1|A|G|189
8C99|1|A|A|190
8C99|1|A|A|191
8C99|1|A|C|192
8C99|1|A|U|193
8C99|1|A|G|194
*
8C99|1|A|C|201
8C99|1|A|U|202
8C99|1|A|A|203
8C99|1|A|A|204
8C99|1|A|G|205
8C99|1|A|U|206
8C99|1|A|A|207
8C99|1|A|C|208

Current chains

Chain A

23S rRNA

Nearby chains