IL_8C9A_006

3D structure

PDB id

8C9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.86 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C9A_006 not in the Motif Atlas

Homologous match to IL_5J7L_250

Geometric discrepancy: 0.3588

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8C9A|1|A|G|188
8C9A|1|A|G|189
8C9A|1|A|A|190
8C9A|1|A|A|191
8C9A|1|A|C|192
8C9A|1|A|U|193
8C9A|1|A|G|194
*
8C9A|1|A|C|201
8C9A|1|A|U|202
8C9A|1|A|A|203
8C9A|1|A|A|204
8C9A|1|A|G|205
8C9A|1|A|U|206
8C9A|1|A|A|207
8C9A|1|A|C|208

Current chains

Chain A

23S rRNA

Nearby chains