8C9A Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8C9A_019 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_8C9A_010 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8C9A_001 | No text annotation | ||
| HL_8C9A_002 | No text annotation | ||
| HL_8C9A_003 | No text annotation | ||
| HL_8C9A_004 | No text annotation | ||
| HL_8C9A_005 | No text annotation | ||
| HL_8C9A_006 | No text annotation | ||
| HL_8C9A_007 | No text annotation | ||
| HL_8C9A_008 | No text annotation | ||
| HL_8C9A_009 | T-loop with 2 stacked bulged bases | ||
| HL_8C9A_020 | No text annotation | ||
| HL_8C9A_011 | No text annotation | ||
| HL_8C9A_012 | No text annotation | ||
| HL_8C9A_013 | GNRA | ||
| HL_8C9A_014 | GNRA | ||
| HL_8C9A_015 | No text annotation | ||
| HL_8C9A_016 | No text annotation | ||
| HL_8C9A_017 | Pseudoknot geometry with 3' bulge | ||
| HL_8C9A_018 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8C9A_015 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_4WF9_015 IL_44923.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8C9A_001 | Triple sheared with non-canonical cWW | ||
| IL_8C9A_002 | Single bulged A | ||
| IL_8C9A_003 | Minor groove platform | ||
| IL_8C9A_004 | No text annotation | ||
| IL_8C9A_019 | No text annotation | ||
| IL_8C9A_005 | Single stack bend | ||
| IL_8C9A_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8C9A_007 | No text annotation | ||
| IL_8C9A_008 | No text annotation | ||
| IL_8C9A_009 | No text annotation | ||
| IL_8C9A_020 | No text annotation | ||
| IL_8C9A_010 | No text annotation | ||
| IL_8C9A_011 | No text annotation | ||
| IL_8C9A_012 | No text annotation | ||
| IL_8C9A_013 | No text annotation | ||
| IL_8C9A_014 | Single stack bend | ||
| IL_8C9A_016 | No text annotation | ||
| IL_8C9A_017 | C-loop | ||
| IL_8C9A_018 | Multiple bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8C9A_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_8C9A_004 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J5_8C9A_002 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:151, 1/A/175:178 | No text annotation | homologous J5_5J7L_013 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8C9A_001 | No text annotation | ||
| J3_8C9A_003 | No text annotation | ||
| J4_8C9A_001 | No text annotation | ||
| J4_8C9A_002 | No text annotation | ||
| J5_8C9A_001 | No text annotation | ||
| J6_8C9A_001 | No text annotation |
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