8C9A Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8C9A_019 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_8C9A_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_8C9A_003 | 1/A/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_8C9A_005 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_8C9A_006 | 1/A/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_8C9A_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_8C9A_008 | 1/A/246:252 | No text annotation | homologous HL_4WF9_008 HL_37369.2 | |
| HL_8C9A_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_8C9A_010 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_8C9A_020 | 1/A/378:396 | No text annotation | ||
| HL_8C9A_011 | 1/A/381:394 | No text annotation | geometric HL_2Y8Y_001 HL_81100.2 | |
| HL_8C9A_012 | 1/A/410:416 | No text annotation | ||
| HL_8C9A_013 | 1/A/462:467 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
| HL_8C9A_014 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.8 | |
| HL_8C9A_015 | 1/A/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_8C9A_016 | 1/A/629:634 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
| HL_8C9A_017 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_8C9A_018 | 1/A/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8C9A_001 | No text annotation | ||
| HL_8C9A_004 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8C9A_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_8C9A_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_4WF9_002 IL_31462.7 | |
| IL_8C9A_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_8C9A_019 | 1/A/82:85, 1/A/97:104 | No text annotation | ||
| IL_8C9A_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_8C9A_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_250 IL_04346.10 | |
| IL_8C9A_007 | 1/A/237:245, 1/A/253:260 | No text annotation | ||
| IL_8C9A_008 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_8C9A_020 | 1/A/274:283, 1/A/357:363 | No text annotation | ||
| IL_8C9A_012 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_8C9A_013 | 1/A/378:381, 1/A/394:396 | No text annotation | ||
| IL_8C9A_014 | 1/A/407:408, 1/A/418:420 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_8C9A_015 | 1/A/481:484, 1/A/496:509 | No text annotation | homologous IL_4WF9_015 IL_81516.2 | |
| IL_8C9A_016 | 1/A/604:610, 1/A/618:624 | No text annotation | ||
| IL_8C9A_017 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8C9A_004 | No text annotation | ||
| IL_8C9A_009 | No text annotation | ||
| IL_8C9A_010 | No text annotation | ||
| IL_8C9A_011 | No text annotation | ||
| IL_8C9A_018 | Multiple bulged bases |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8C9A_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_7A0S_001 J3_60031.2 | |
| J3_8C9A_003 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_8C9A_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_8C9A_004 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J4_8C9A_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_8C9A_002 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J5_8C9A_002 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:151, 1/A/175:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J6_8C9A_001 | 1/A/45:46, 1/A/179:183, 1/A/214:225, 1/A/230:235, 1/A/262:266, 1/A/426:433 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J5_8C9A_001 | No text annotation |
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