IL_8C9A_010

3D structure

PDB id

8C9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.86 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C9A_010 not in the Motif Atlas

Geometric match to IL_8VFS_003

Geometric discrepancy: 0.3005

The information below is about IL_8VFS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8C9A|1|A|C|281
8C9A|1|A|A|282
8C9A|1|A|G|283
*
8C9A|1|A|C|357
8C9A|1|A|G|359

Current chains

Chain A

23S rRNA

Nearby chains