IL_8C9B_001

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C9B_001 not in the Motif Atlas

Homologous match to IL_9DFE_001

Geometric discrepancy: 0.4193

The information below is about IL_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04021.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8C9B|1|A|G|24
8C9B|1|A|U|25
8C9B|1|A|G|26
8C9B|1|A|G|27
8C9B|1|A|A|28
8C9B|1|A|U|29
8C9B|1|A|G|30
*
8C9B|1|A|C|510
8C9B|1|A|U|511
8C9B|1|A|G|512
8C9B|1|A|A|513
8C9B|1|A|A|514
8C9B|1|A|A|515
8C9B|1|A|C|516

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22