IL_8C9B_016

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8C9B|1|A|A|504, 8C9B|1|A|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C9B_016 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.1945

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8C9B|1|A|G|481
8C9B|1|A|A|482
8C9B|1|A|A|483
8C9B|1|A|C|484
*
8C9B|1|A|G|496
8C9B|1|A|A|497
8C9B|1|A|G|498
8C9B|1|A|U|499
8C9B|1|A|G|500
8C9B|1|A|A|501
8C9B|1|A|A|502
8C9B|1|A|A|503
8C9B|1|A|A|504
8C9B|1|A|A|505
8C9B|1|A|G|506
8C9B|1|A|A|507
8C9B|1|A|A|508
8C9B|1|A|C|509

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24