IL_8C9B_018

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

AGA*UCCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C9B_018 not in the Motif Atlas

Homologous match to IL_4WF9_003

Geometric discrepancy: 0.2579

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_90351.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

8

Unit IDs

8C9B|1|A|A|42
8C9B|1|A|G|43
8C9B|1|A|A|44
*
8C9B|1|A|U|434
8C9B|1|A|C|435
8C9B|1|A|C|436
8C9B|1|A|U|437

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34