IL_8C9C_015

3D structure

PDB id

8C9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8C9C|1|A|A|504, 8C9C|1|A|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8C9C_015 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.1974

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8C9C|1|A|G|481
8C9C|1|A|A|482
8C9C|1|A|A|483
8C9C|1|A|C|484
*
8C9C|1|A|G|496
8C9C|1|A|A|497
8C9C|1|A|G|498
8C9C|1|A|U|499
8C9C|1|A|G|500
8C9C|1|A|A|501
8C9C|1|A|A|502
8C9C|1|A|A|503
8C9C|1|A|A|504
8C9C|1|A|A|505
8C9C|1|A|G|506
8C9C|1|A|A|507
8C9C|1|A|A|508
8C9C|1|A|C|509

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24