8C9C Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8C9C_001 | No text annotation | ||
| HL_8C9C_002 | No text annotation | ||
| HL_8C9C_003 | No text annotation | ||
| HL_8C9C_004 | No text annotation | ||
| HL_8C9C_005 | No text annotation | ||
| HL_8C9C_006 | No text annotation | ||
| HL_8C9C_007 | No text annotation | ||
| HL_8C9C_008 | No text annotation | ||
| HL_8C9C_009 | T-loop with 2 stacked bulged bases | ||
| HL_8C9C_010 | T-loop with unstacked turn | ||
| HL_8C9C_011 | No text annotation | ||
| HL_8C9C_012 | No text annotation | ||
| HL_8C9C_013 | GNRA | ||
| HL_8C9C_014 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8C9C_001 | Triple sheared with non-canonical cWW | ||
| IL_8C9C_002 | Single bulged A | ||
| IL_8C9C_016 | Minor groove platform with extra cWW | ||
| IL_8C9C_003 | Minor groove platform | ||
| IL_8C9C_004 | No text annotation | ||
| IL_8C9C_005 | Single stack bend | ||
| IL_8C9C_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_8C9C_007 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_8C9C_008 | No text annotation | ||
| IL_8C9C_009 | No text annotation | ||
| IL_8C9C_010 | Not an internal loop | ||
| IL_8C9C_011 | No text annotation | ||
| IL_8C9C_017 | No text annotation | ||
| IL_8C9C_012 | No text annotation | ||
| IL_8C9C_013 | No text annotation | ||
| IL_8C9C_014 | No text annotation | ||
| IL_8C9C_015 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8C9C_001 | No text annotation | ||
| J3_8C9C_003 | No text annotation | ||
| J3_8C9C_002 | No text annotation | ||
| J3_8C9C_004 | No text annotation | ||
| J4_8C9C_001 | No text annotation | ||
| J5_8C9C_001 | No text annotation | ||
| J6_8C9C_002 | No text annotation | ||
| J6_8C9C_001 | No text annotation |
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