8C9C Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8C9C_001 | 1/A/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_8C9C_002 | 1/A/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_8C9C_003 | 1/A/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_8C9C_004 | 1/A/136:143 | No text annotation | geometric HL_6CF2_001 HL_87553.1 | |
| HL_8C9C_005 | 1/A/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_8C9C_006 | 1/A/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_8C9C_007 | 1/A/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_8C9C_008 | 1/A/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_8C9C_009 | 1/A/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_8C9C_010 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_8C9C_011 | 1/A/381:394 | No text annotation | ||
| HL_8C9C_012 | 1/A/410:418 | No text annotation | ||
| HL_8C9C_013 | 1/A/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_8C9C_014 | 1/A/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8C9C_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
| IL_8C9C_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_4WF9_002 IL_31462.6 | |
| IL_8C9C_003 | 1/A/43:44, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_8C9C_004 | 1/A/82:85, 1/A/97:104 | No text annotation | ||
| IL_8C9C_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
| IL_8C9C_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_377 NA | |
| IL_8C9C_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_8C9C_008 | 1/A/269:271, 1/A/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_8C9C_017 | 1/A/290:295, 1/A/343:350 | No text annotation | ||
| IL_8C9C_012 | 1/A/292:295, 1/A/343:348 | No text annotation | homologous IL_7A0S_008 IL_05192.4 | |
| IL_8C9C_013 | 1/A/376:381, 1/A/394:398 | No text annotation | ||
| IL_8C9C_014 | 1/A/407:410, 1/A/418:420 | No text annotation | ||
| IL_8C9C_015 | 1/A/481:484, 1/A/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8C9C_016 | Minor groove platform with extra cWW | ||
| IL_8C9C_009 | No text annotation | ||
| IL_8C9C_010 | Not an internal loop | ||
| IL_8C9C_011 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8C9C_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_7A0S_001 J3_60031.2 | |
| J3_8C9C_003 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_8C9C_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_7A0S_002 J3_35667.2 | |
| J3_8C9C_004 | 1/A/297:301, 1/A/316:325, 1/A/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J4_8C9C_001 | 1/A/266:269, 1/A/370:375, 1/A/399:406, 1/A/421:426 | No text annotation | ||
| J5_8C9C_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:151, 1/A/175:178 | No text annotation | ||
| J6_8C9C_002 | 1/A/45:46, 1/A/179:184, 1/A/212:225, 1/A/230:235, 1/A/262:266, 1/A/426:433 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J6_8C9C_001 | No text annotation |
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