3D structure

PDB id
8CA7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Omadacycline and spectinomycin bound to the 30S ribosomal subunit head
Experimental method
ELECTRON MICROSCOPY
Resolution
2.06 Å

Loop

Sequence
GUUGC*GAACUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CA7_013 not in the Motif Atlas
Homologous match to IL_5J7L_051
Geometric discrepancy: 0.0983
The information below is about IL_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

8CA7|1|A|G|1124
8CA7|1|A|U|1125
8CA7|1|A|U|1126
8CA7|1|A|G|1127
8CA7|1|A|C|1128
*
8CA7|1|A|G|1144
8CA7|1|A|A|1145
8CA7|1|A|A|1146
8CA7|1|A|C|1147
8CA7|1|A|U|1148
8CA7|1|A|C|1149

Current chains

Chain A
16S rRNA

Nearby chains

Chain I
Small ribosomal subunit protein uS9
Chain J
Small ribosomal subunit protein uS10

Coloring options:


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