IL_8CA7_016

3D structure

PDB id

8CA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Omadacycline and spectinomycin bound to the 30S ribosomal subunit head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.06 Å

Loop

Sequence

UACAAAG*CAUAAAG

Length

14 nucleotides

Bulged bases

8CA7|1|A|U|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CA7_016 not in the Motif Atlas

Homologous match to IL_5J7L_054

Geometric discrepancy: 0.098

The information below is about IL_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.2

Basepair signature

cWW-L-R-tWH-L-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

8CA7|1|A|U|1247
8CA7|1|A|A|1248
8CA7|1|A|C|1249
8CA7|1|A|A|1250
8CA7|1|A|A|1251
8CA7|1|A|A|1252
8CA7|1|A|G|1253
*
8CA7|1|A|C|1284
8CA7|1|A|A|1285
8CA7|1|A|U|1286
8CA7|1|A|A|1287
8CA7|1|A|A|1288
8CA7|1|A|A|1289
8CA7|1|A|G|1290

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14