IL_8CAH_011

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8CAH|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAH_011 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1056

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8CAH|1|2|G|143
8CAH|1|2|U|144
8CAH|1|2|A|145
8CAH|1|2|U|146
8CAH|1|2|A|147
8CAH|1|2|A|148
8CAH|1|2|C|149
*
8CAH|1|2|G|165
8CAH|1|2|C|166
8CAH|1|2|U|167
8CAH|1|2|A|168
8CAH|1|2|A|169
8CAH|1|2|U|170
8CAH|1|2|A|171
8CAH|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-B

Chain d

40S ribosomal protein S24-A