IL_8CAH_034
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CAH_034 not in the Motif Atlas
- Homologous match to IL_4V88_413
- Geometric discrepancy: 0.1464
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
8CAH|1|2|A|550
8CAH|1|2|G|551
8CAH|1|2|G|552
8CAH|1|2|G|553
8CAH|1|2|C|554
8CAH|1|2|A|555
8CAH|1|2|A|556
8CAH|1|2|G|557
*
8CAH|1|2|C|587
8CAH|1|2|U|588
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain R
- 40S ribosomal protein S2
- Chain W
- 40S ribosomal protein S9-A
- Chain g
- 40S ribosomal protein S30-A
- Chain z
- Eukaryotic translation initiation factor 3 subunit J
Coloring options: