IL_8CAH_080
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CAH_080 not in the Motif Atlas
- Geometric match to IL_4V88_458
- Geometric discrepancy: 0.1088
- The information below is about IL_4V88_458
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_58032.1
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
8CAH|1|2|C|1389
8CAH|1|2|U|1390
8CAH|1|2|A|1391
*
8CAH|1|2|U|1407
8CAH|1|2|G|1408
8CAH|1|2|G|1409
8CAH|1|2|A|1410
8CAH|1|2|A|1411
8CAH|1|2|G|1412
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S5
- Chain F
- 40S ribosomal protein S16-A
- Chain H
- 40S ribosomal protein S17-A
- Chain O
- Guanine nucleotide-binding protein subunit beta-like protein
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