IL_8CAH_081
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CAH_081 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.1145
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CAH|1|2|G|1480
8CAH|1|2|C|1481
8CAH|1|2|C|1482
8CAH|1|2|A|1483
8CAH|1|2|G|1484
8CAH|1|2|C|1485
8CAH|1|2|G|1486
8CAH|1|2|A|1487
*
8CAH|1|2|U|1519
8CAH|1|2|U|1520
8CAH|1|2|G|1521
8CAH|1|2|U|1522
8CAH|1|2|G|1523
8CAH|1|2|A|1524
8CAH|1|2|A|1525
8CAH|1|2|A|1526
8CAH|1|2|C|1527
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain B
- 40S ribosomal protein S5
- Chain F
- 40S ribosomal protein S16-A
- Chain J
- 40S ribosomal protein S19-A
- Chain K
- 40S ribosomal protein S20
- Chain M
- RPS29A isoform 1
Coloring options: