IL_8CAH_096

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAH_096 not in the Motif Atlas

Geometric match to IL_4V88_474

Geometric discrepancy: 0.1135

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8CAH|1|2|A|1678
8CAH|1|2|G|1679
8CAH|1|2|G|1680
8CAH|1|2|A|1681
8CAH|1|2|U|1682
*
8CAH|1|2|A|1719
8CAH|1|2|G|1720
8CAH|1|2|A|1721
8CAH|1|2|A|1722
8CAH|1|2|U|1723

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

OTU domain-containing protein 2

Chain T

40S ribosomal protein S6-B

Chain V

40S ribosomal protein S8-A