IL_8CAH_097

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAH_097 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.1421

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8CAH|1|2|U|1688
8CAH|1|2|A|1689
8CAH|1|2|G|1690
*
8CAH|1|2|C|1711
8CAH|1|2|A|1712
8CAH|1|2|G|1713

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

OTU domain-containing protein 2