IL_8CAH_100

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAH_100 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3954

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8CAH|1|2|G|1233
8CAH|1|2|A|1234
8CAH|1|2|C|1235
8CAH|1|2|A|1236
*
8CAH|1|2|U|1249
8CAH|1|2|U|1250
8CAH|1|2|U|1251
8CAH|1|2|C|1252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S10-A

Chain D

40S ribosomal protein S12

Chain M

RPS29A isoform 1

Chain N

40S ribosomal protein S31