IL_8CAI_012

3D structure

PDB id

8CAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin and Hygromycin B bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8CAI|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAI_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1082

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8CAI|1|A|G|147
8CAI|1|A|G|148
8CAI|1|A|A|149
8CAI|1|A|U|150
8CAI|1|A|A|151
8CAI|1|A|A|152
8CAI|1|A|C|153
*
8CAI|1|A|G|168
8CAI|1|A|C|169
8CAI|1|A|U|170
8CAI|1|A|A|171
8CAI|1|A|A|172
8CAI|1|A|U|173
8CAI|1|A|A|174
8CAI|1|A|C|175

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20