IL_8CAI_022

3D structure

PDB id

8CAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin and Hygromycin B bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAI_022 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.0962

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8CAI|1|A|G|450
8CAI|1|A|A|451
8CAI|1|A|A|452
8CAI|1|A|G|453
8CAI|1|A|G|454
8CAI|1|A|G|455
*
8CAI|1|A|C|477
8CAI|1|A|A|478
8CAI|1|A|U|479
8CAI|1|A|U|480
8CAI|1|A|G|481
8CAI|1|A|A|482
8CAI|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16