IL_8CAM_010

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAM_010 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3868

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8CAM|1|a|C|274
8CAM|1|a|C|275
8CAM|1|a|U|276
8CAM|1|a|G|277
8CAM|1|a|A|278
8CAM|1|a|A|279
8CAM|1|a|U|280
8CAM|1|a|C|281
*
8CAM|1|a|G|359
8CAM|1|a|U|360
8CAM|1|a|G|361
8CAM|1|a|A|362
8CAM|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains