IL_8CAM_037

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

8CAM|1|a|A|1127, 8CAM|1|a|U|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAM_037 not in the Motif Atlas

Geometric match to IL_5J7L_281

Geometric discrepancy: 0.0453

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

8CAM|1|a|G|1024
8CAM|1|a|G|1025
8CAM|1|a|G|1026
8CAM|1|a|A|1027
8CAM|1|a|A|1028
8CAM|1|a|A|1029
8CAM|1|a|C|1030
*
8CAM|1|a|G|1124
8CAM|1|a|G|1125
8CAM|1|a|A|1126
8CAM|1|a|A|1127
8CAM|1|a|G|1128
8CAM|1|a|A|1129
8CAM|1|a|U|1130
8CAM|1|a|G|1131
8CAM|1|a|U|1132
8CAM|1|a|A|1133
8CAM|1|a|A|1134
8CAM|1|a|C|1135
8CAM|1|a|G|1136
8CAM|1|a|G|1137
8CAM|1|a|G|1138
8CAM|1|a|G|1139
8CAM|1|a|C|1140

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13

Chain l

Large ribosomal subunit protein uL16