IL_8CAM_066

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8CAM|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAM_066 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.0853

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8CAM|1|a|U|1712
8CAM|1|a|A|1713
8CAM|1|a|U|1714
8CAM|1|a|G|1715
8CAM|1|a|U|1716
8CAM|1|a|A|1717
8CAM|1|a|G|1718
*
8CAM|1|a|U|1742
8CAM|1|a|G|1743
8CAM|1|a|A|1744
8CAM|1|a|A|1745
8CAM|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains