3D structure

PDB id
8CAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Evernimicin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.86 Å

Loop

Sequence
UG*UAAA
Length
6 nucleotides
Bulged bases
8CAM|1|a|A|1899, 8CAM|1|a|A|1900
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CAM_071 not in the Motif Atlas
Homologous match to IL_5J7L_315
Geometric discrepancy: 0.0549
The information below is about IL_5J7L_315
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_82107.4
Basepair signature
cWW-cWW
Number of instances in this motif group
30

Unit IDs

8CAM|1|a|U|1841
8CAM|1|a|G|1842
*
8CAM|1|a|U|1898
8CAM|1|a|A|1899
8CAM|1|a|A|1900
8CAM|1|a|A|1901

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
Large ribosomal subunit protein uL2

Coloring options:


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