IL_8CAM_075

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

8CAM|1|a|A|1938, 8CAM|1|a|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAM_075 not in the Motif Atlas

Homologous match to IL_5J7L_319

Geometric discrepancy: 0.0582

The information below is about IL_5J7L_319

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

8CAM|1|a|C|1934
8CAM|1|a|G|1935
8CAM|1|a|A|1936
8CAM|1|a|A|1937
8CAM|1|a|A|1938
8CAM|1|a|5MU|1939
8CAM|1|a|U|1940
8CAM|1|a|C|1941
8CAM|1|a|C|1942
8CAM|1|a|U|1943
8CAM|1|a|U|1944
8CAM|1|a|G|1945
*
8CAM|1|a|C|1961
8CAM|1|a|5MC|1962
8CAM|1|a|U|1963
8CAM|1|a|G|1964

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2