3D structure

PDB id
8CAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Evernimicin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.86 Å

Loop

Sequence
CUGAAG*CGUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CAM_102 not in the Motif Atlas
Homologous match to IL_5J7L_351
Geometric discrepancy: 0.0735
The information below is about IL_5J7L_351
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_29471.1
Basepair signature
cWW-cWW-L-tHS-L-cWW
Number of instances in this motif group
1

Unit IDs

8CAM|1|a|C|2806
8CAM|1|a|U|2807
8CAM|1|a|G|2808
8CAM|1|a|A|2809
8CAM|1|a|A|2810
8CAM|1|a|G|2811
*
8CAM|1|a|C|2889
8CAM|1|a|G|2890
8CAM|1|a|U|2891
8CAM|1|a|G|2892

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
Large ribosomal subunit protein uL3
Chain r
Large ribosomal subunit protein uL22
Chain z
Large ribosomal subunit protein bL32

Coloring options:


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