IL_8CAS_062

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

8CAS|1|2|C|1158, 8CAS|1|2|C|1159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAS_062 not in the Motif Atlas

Geometric match to IL_1KOG_007

Geometric discrepancy: 0.1727

The information below is about IL_1KOG_007

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

8CAS|1|2|A|1157
8CAS|1|2|C|1158
8CAS|1|2|C|1159
8CAS|1|2|A|1160
*
8CAS|1|2|U|1617
8CAS|1|2|C|1618
8CAS|1|2|C|1619
8CAS|1|2|C|1620
8CAS|1|2|U|1621

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain 3

mRNA

Chain C

40S ribosomal protein S5

Chain H

40S ribosomal protein S16-A

Chain i

40S ribosomal protein S28-A