IL_8CAS_079
3D structure
- PDB id
- 8CAS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CAS_079 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.1199
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CAS|1|2|G|1480
8CAS|1|2|C|1481
8CAS|1|2|C|1482
8CAS|1|2|A|1483
8CAS|1|2|G|1484
8CAS|1|2|C|1485
8CAS|1|2|G|1486
8CAS|1|2|A|1487
*
8CAS|1|2|U|1519
8CAS|1|2|U|1520
8CAS|1|2|G|1521
8CAS|1|2|U|1522
8CAS|1|2|G|1523
8CAS|1|2|A|1524
8CAS|1|2|A|1525
8CAS|1|2|A|1526
8CAS|1|2|C|1527
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S3
- Chain C
- 40S ribosomal protein S5
- Chain H
- 40S ribosomal protein S16-A
- Chain K
- 40S ribosomal protein S19-A
- Chain L
- 40S ribosomal protein S20
- Chain N
- RPS29A isoform 1
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