IL_8CAS_086
3D structure
- PDB id
- 8CAS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8CAS|1|2|A|1756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CAS_086 not in the Motif Atlas
- Geometric match to IL_5J7L_033
- Geometric discrepancy: 0.3483
- The information below is about IL_5J7L_033
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8CAS|1|2|C|1644
8CAS|1|2|G|1645
8CAS|1|2|C|1646
8CAS|1|2|U|1647
*
8CAS|1|2|A|1753
8CAS|1|2|A|1754
8CAS|1|2|A|1755
8CAS|1|2|A|1756
8CAS|1|2|G|1757
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA
- Chain A
- Eukaryotic translation initiation factor 4C
- Chain c
- 40S ribosomal protein S23-A
- Chain m
- TIF5 isoform 1
- Chain n
- 60S ribosomal protein L41-A
Coloring options: