IL_8CAS_088

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAS_088 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.239

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8CAS|1|2|C|1653
8CAS|1|2|G|1654
8CAS|1|2|A|1655
8CAS|1|2|U|1656
*
8CAS|1|2|A|1744
8CAS|1|2|G|1745
8CAS|1|2|A|1746
8CAS|1|2|G|1747

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain k

RLI1 isoform 1

Chain n

60S ribosomal protein L41-A