IL_8CAS_095

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUAG*CAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAS_095 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.2603

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8CAS|1|2|U|1687
8CAS|1|2|U|1688
8CAS|1|2|A|1689
8CAS|1|2|G|1690
*
8CAS|1|2|C|1711
8CAS|1|2|A|1712
8CAS|1|2|G|1713
8CAS|1|2|A|1714

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain x

OTU domain-containing protein 2