IL_8CAS_101

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8CAS|1|2|C|1274

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAS_101 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1037

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8CAS|1|2|U|1272
8CAS|1|2|G|1273
8CAS|1|2|C|1274
8CAS|1|2|A|1275
8CAS|1|2|U|1276
*
8CAS|1|2|A|1436
8CAS|1|2|U|1437
8CAS|1|2|G|1438

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain A

Eukaryotic translation initiation factor 4C

Chain B

40S ribosomal protein S3

Chain D

40S ribosomal protein S10-A

Chain L

40S ribosomal protein S20

Chain N

RPS29A isoform 1