IL_8CAZ_018

3D structure

PDB id

8CAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

empty 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CAZ_018 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0847

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8CAZ|1|A|C|1303
8CAZ|1|A|G|1304
8CAZ|1|A|G|1305
8CAZ|1|A|A|1306
8CAZ|1|A|U|1307
8CAZ|1|A|U|1308
*
8CAZ|1|A|A|1329
8CAZ|1|A|U|1330
8CAZ|1|A|G|1331
8CAZ|1|A|A|1332
8CAZ|1|A|A|1333
8CAZ|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

Small ribosomal subunit protein uS13