IL_8CBJ_007
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 8CBJ|1|2|U|66, 8CBJ|1|2|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_007 not in the Motif Atlas
- Geometric match to IL_4V88_390
- Geometric discrepancy: 0.1278
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CBJ|1|2|U|64
8CBJ|1|2|A|65
8CBJ|1|2|U|66
8CBJ|1|2|A|67
8CBJ|1|2|A|68
8CBJ|1|2|G|69
*
8CBJ|1|2|U|82
8CBJ|1|2|G|83
8CBJ|1|2|A|84
8CBJ|1|2|A|85
8CBJ|1|2|A|86
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6-B
- Chain Y
- 40S ribosomal protein S24-A
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