IL_8CBJ_008

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_008 not in the Motif Atlas

Geometric match to IL_4V88_391

Geometric discrepancy: 0.1082

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8CBJ|1|2|G|109
8CBJ|1|2|U|110
8CBJ|1|2|U|111
8CBJ|1|2|A|112
*
8CBJ|1|2|U|302
8CBJ|1|2|U|303
8CBJ|1|2|U|304
8CBJ|1|2|C|305

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-B

Chain I

40S ribosomal protein S8-A

Chain L

40S ribosomal protein S11-A