IL_8CBJ_011

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

8CBJ|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_011 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.18

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8CBJ|1|2|U|144
8CBJ|1|2|A|145
8CBJ|1|2|U|146
8CBJ|1|2|A|147
8CBJ|1|2|A|148
8CBJ|1|2|C|149
*
8CBJ|1|2|G|165
8CBJ|1|2|C|166
8CBJ|1|2|U|167
8CBJ|1|2|A|168
8CBJ|1|2|A|169
8CBJ|1|2|U|170
8CBJ|1|2|A|171

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-B

Chain Y

40S ribosomal protein S24-A