IL_8CBJ_012

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_012 not in the Motif Atlas

Geometric match to IL_6RA4_002

Geometric discrepancy: 0.0976

The information below is about IL_6RA4_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8CBJ|1|2|U|150
8CBJ|1|2|G|151
8CBJ|1|2|U|152
*
8CBJ|1|2|A|162
8CBJ|1|2|G|163
8CBJ|1|2|A|164

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-B

Chain Y

40S ribosomal protein S24-A