IL_8CBJ_017

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUG*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_017 not in the Motif Atlas

Geometric match to IL_4V88_400

Geometric discrepancy: 0.3019

The information below is about IL_4V88_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47298.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8CBJ|1|2|C|270
8CBJ|1|2|A|271
8CBJ|1|2|U|272
8CBJ|1|2|G|273
*
8CBJ|1|2|U|283
8CBJ|1|2|G|284
8CBJ|1|2|G|285

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-B