IL_8CBJ_028

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_028 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.1377

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8CBJ|1|2|A|485
8CBJ|1|2|G|486
8CBJ|1|2|G|487
*
8CBJ|1|2|C|500
8CBJ|1|2|U|501
8CBJ|1|2|U|502

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain e

40S ribosomal protein S30-A

Chain i

ENP1 isoform 1