IL_8CBJ_041

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAAC*GCGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_041 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.1876

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8CBJ|1|2|U|705
8CBJ|1|2|A|706
8CBJ|1|2|A|707
8CBJ|1|2|C|708
*
8CBJ|1|2|G|730
8CBJ|1|2|C|731
8CBJ|1|2|G|732
8CBJ|1|2|A|733

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains