IL_8CBJ_042

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_042 not in the Motif Atlas

Geometric match to IL_4K27_002

Geometric discrepancy: 0.3171

The information below is about IL_4K27_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8CBJ|1|2|C|709
8CBJ|1|2|U|710
8CBJ|1|2|U|711
8CBJ|1|2|G|712
*
8CBJ|1|2|C|726
8CBJ|1|2|U|727
8CBJ|1|2|U|728
8CBJ|1|2|G|729

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-B