IL_8CBJ_047
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUU*AUC
- Length
- 7 nucleotides
- Bulged bases
- 8CBJ|1|2|U|820
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_047 not in the Motif Atlas
- Geometric match to IL_2O3V_001
- Geometric discrepancy: 0.2724
- The information below is about IL_2O3V_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 79
Unit IDs
8CBJ|1|2|G|819
8CBJ|1|2|U|820
8CBJ|1|2|U|821
8CBJ|1|2|U|822
*
8CBJ|1|2|A|850
8CBJ|1|2|U|851
8CBJ|1|2|C|852
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain K
- OTU domain-containing protein 2
Coloring options: