IL_8CBJ_061

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_061 not in the Motif Atlas

Geometric match to IL_4V88_440

Geometric discrepancy: 0.0878

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8CBJ|1|2|G|1111
8CBJ|1|2|G|1112
8CBJ|1|2|A|1113
8CBJ|1|2|G|1114
8CBJ|1|2|U|1115
8CBJ|1|2|A|1116
8CBJ|1|2|U|1117
8CBJ|1|2|G|1118
*
8CBJ|1|2|U|1129
8CBJ|1|2|G|1130
8CBJ|1|2|A|1131
8CBJ|1|2|A|1132
8CBJ|1|2|A|1133
8CBJ|1|2|C|1134

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain k

TSR1 isoform 1