IL_8CBJ_070

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*CCU

Length

6 nucleotides

Bulged bases

8CBJ|1|2|U|1269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_070 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2617

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8CBJ|1|2|G|1268
8CBJ|1|2|U|1269
8CBJ|1|2|G|1270
*
8CBJ|1|2|C|1440
8CBJ|1|2|C|1441
8CBJ|1|2|U|1442

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain i

ENP1 isoform 1

Chain k

TSR1 isoform 1