IL_8CBJ_076

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CBJ_076 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.2196

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

8CBJ|1|2|C|1306
8CBJ|1|2|U|1307
8CBJ|1|2|G|1308
*
8CBJ|1|2|C|1317
8CBJ|1|2|G|1318

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain R

40S ribosomal protein S17-A