IL_8CBJ_078
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AAUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- 8CBJ|1|2|A|1346, 8CBJ|1|2|U|1347
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_078 not in the Motif Atlas
- Geometric match to IL_4V88_456
- Geometric discrepancy: 0.2773
- The information below is about IL_4V88_456
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_76458.1
- Basepair signature
- cWW-cSH-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CBJ|1|2|A|1345
8CBJ|1|2|A|1346
8CBJ|1|2|U|1347
8CBJ|1|2|A|1348
*
8CBJ|1|2|U|1377
8CBJ|1|2|U|1378
8CBJ|1|2|C|1379
8CBJ|1|2|U|1380
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain Q
- 40S ribosomal protein S16-A
- Chain U
- 40S ribosomal protein S20
- Chain g
- Guanine nucleotide-binding protein subunit beta-like protein
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