IL_8CBJ_081
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_081 not in the Motif Atlas
- Geometric match to IL_4V88_459
- Geometric discrepancy: 0.1615
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CBJ|1|2|G|1480
8CBJ|1|2|C|1481
8CBJ|1|2|C|1482
8CBJ|1|2|A|1483
8CBJ|1|2|G|1484
8CBJ|1|2|C|1485
8CBJ|1|2|G|1486
8CBJ|1|2|A|1487
*
8CBJ|1|2|U|1519
8CBJ|1|2|U|1520
8CBJ|1|2|G|1521
8CBJ|1|2|U|1522
8CBJ|1|2|G|1523
8CBJ|1|2|A|1524
8CBJ|1|2|A|1525
8CBJ|1|2|A|1526
8CBJ|1|2|C|1527
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain F
- 40S ribosomal protein S5
- Chain Q
- 40S ribosomal protein S16-A
- Chain T
- 40S ribosomal protein S19-A
- Chain U
- 40S ribosomal protein S20
- Chain d
- RPS29A isoform 1
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