IL_8CBJ_087
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8CBJ|1|2|A|1754
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CBJ_087 not in the Motif Atlas
- Geometric match to IL_6DTD_001
- Geometric discrepancy: 0.3676
- The information below is about IL_6DTD_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_59580.1
- Basepair signature
- cWW-cHW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CBJ|1|2|C|1644
8CBJ|1|2|G|1645
8CBJ|1|2|C|1646
8CBJ|1|2|U|1647
*
8CBJ|1|2|A|1753
8CBJ|1|2|A|1754
8CBJ|1|2|A|1755
8CBJ|1|2|A|1756
8CBJ|1|2|G|1757
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain X
- 40S ribosomal protein S23-A
- Chain k
- TSR1 isoform 1
- Chain l
- non-specific serine/threonine protein kinase
- Chain y
- rRNA adenine N(6)-methyltransferase
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